PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00300g00029.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 241aa    MW: 27925.3 Da    PI: 9.3801
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00300g00029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1332e-1052127289
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+Y    GF vrk +++++k+++ + + tf+ + + +           +r+r e r+gC a+++ k + +g wev++l  eHn
  Peaxi162Scf00300g00029.1  52 AYNSYVVAKGFGVRKGAKTYNKNQELTRTITFYSNYQER-----------KRQRLEYRCGCLARIRFKIS-NGMWEVIELCDEHN 124
                               5********************999988888887655433...........3567788***********99.************** PP

                      FAR1  87 Hel 89 
                               H +
  Peaxi162Scf00300g00029.1 125 HLM 127
                               *76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-752127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGDSLVDNDD FDNEVHNDGQ RSSTVQNVSD INNDFTLKIV MKFNSEDESY EAYNSYVVAK  60
GFGVRKGAKT YNKNQELTRT ITFYSNYQER KRQRLEYRCG CLARIRFKIS NGMWEVIELC  120
DEHNHLMIEE NLRHFIRKLT DSTKAANDVE SEEISRKHLY QAKVEITKLQ GELYAEASHK  180
SCSNSRIYVG PSSGVNDQVL DPFKKKGKGN GYGRLKPRSE QRKKRAPHKM LKARAIEQQQ  240
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203224KKKGKGNGYGRLKPRSEQRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467903.17e-56PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_019266793.17e-56PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZUA72e-54A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRINGXP_009771804.14e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-08FAR1-related sequence 10