PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00304g00004.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 174aa MW: 19464 Da PI: 6.8966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00304g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.1e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+l+r+C ++C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r++dPvyG++g i +lq+ Peaxi162Scf00304g00004.1 11 SCAACKFLKRRCIPNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLKDPVYGCIGAIASLQR 95 6********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++ +l+++l +++++ Peaxi162Scf00304g00004.1 96 KMVELQHDLMVTRAH 110 ******9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKSNEPRSSS SCAACKFLKR RCIPNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP 60 QDQREDTVNS LVYEAEVRLK DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYETKPSS 120 ASCSFLDYDP PNVNVTSAFM DFSASNGLVD TFTQNSFVMD HGGSTNEFGQ LPFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	6	138	6	131	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	6	138	6	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-110	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567871.1	1e-106	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	4e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2G2ZWR8	1e-106	A0A2G2ZWR8_CAPAN; LOB domain-containing protein 21
STRING	PGSC0003DMT400071281	1e-101	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-61	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]