PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00304g01018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 247aa    MW: 28656.2 Da    PI: 8.0685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00304g01018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l  ++ ++   +W+  ++  g+ Rt+k+c++rw +yl
  Peaxi162Scf00304g01018.1 15 KGPWSPEEDQKLTSYIMKYRIWNWNQMPKFAGLSRTGKSCRLRWVNYL 62
                              79*****************999************************97 PP
2Myb_DNA-binding41.53e-1368113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e  ++  + lG++ W++I+++++ gRt++++k++++++l
  Peaxi162Scf00304g01018.1  68 RGPFSMEEVETVIRMYQSLGNR-WSAISKELP-GRTDNEIKNFFHTHL 113
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.3951062IPR017877Myb-like domain
SuperFamilySSF466896.36E-2812109IPR009057Homeodomain-like
SMARTSM007173.0E-111464IPR001005SANT/Myb domain
PfamPF002492.4E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-221669IPR009057Homeodomain-like
CDDcd001674.30E-81762No hitNo description
PROSITE profilePS5129420.07863117IPR017930Myb domain
SMARTSM007171.0E-1267115IPR001005SANT/Myb domain
PfamPF002495.9E-1268113IPR001005SANT/Myb domain
CDDcd001672.41E-870113No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQKLHNKNMG TNSKKGPWSP EEDQKLTSYI MKYRIWNWNQ MPKFAGLSRT GKSCRLRWVN  60
YLRPDLKRGP FSMEEVETVI RMYQSLGNRW SAISKELPGR TDNEIKNFFH THLKKQFGTK  120
VNDHVQVKRK ATCKKSKKAK ELEMRTRGET QEKPNQSLDM SSSDITFDEN HNWDFANFSE  180
TSSEDNYCVN SLGAVPIIDS MVILESNPTT SEDPDFSVQD FRDETSINSS NVDFWLELYM  240
AAENLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23151197110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.13e-91transcription factor MYB14-like
TrEMBLM1BRU71e-88M1BRU7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000515132e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-49myb domain protein 14