PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00307g00011.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 202aa    MW: 23154.4 Da    PI: 5.1514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00307g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-1414461446
                              HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgkl 46
                               +  + ++KKA+ELSvLC+++va+iifs++ k+
  Peaxi162Scf00307g00011.1 14 PRKVTSLFKKAQELSVLCNVQVAIIIFSPDEKV 46
                              334467************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-5152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.222746IPR002100Transcription factor, MADS-box
PfamPF003191.6E-12746IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-14885IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASNSVSKRN ALLPRKVTSL FKKAQELSVL CNVQVAIIIF SPDEKVPIMW PSETQVRQRL  60
TSYLGQSEFQ RSKKLVLHEK YLLEKLECKV EEIRKMEEKM EMESLFNELV KGMSIYELDA  120
KELRGLIKLA TLKLAKVEER KKQLEEERKK RDEERKKKLN EDDVQPAEPP VAGGESGAGP  180
DLEEGDNKNA GEEDDEHPND SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139157RKKQLEEERKKRDEERKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685131e-134FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT651e-100B6DT65_PETHY; Type I MADS box transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.12e-13AGAMOUS-like 90