PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00311g00051.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 828aa    MW: 92543 Da    PI: 6.5581
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00311g00051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.6e-10180217546
                       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                               G+r+ k +gr+ A I dp    +r k+++lg+f+t eeA ka+
  Peaxi162Scf00311g00051.1 180 GIRRQK-NGRYGAVIGDP----IRhKQVWLGTFDTVEEASKAY 217
                               999888.8*********7....357*****************9 PP
2AP232.52.1e-10277321452
                       AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                                +V+ +kk+g++  eIr+p    ++ kr++lg+f taeeA +a+   +++
  Peaxi162Scf00311g00051.1 277 LNVY-KKKSGKYTTEIRHP----ISeKRIWLGTFATAEEASQAYQSKKLE 321
                               5787.5569*********7....358*****************9766655 PP
3AP229.51.8e-09522567554
                       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                               G+ +  k+gr+ A Irdp    +r k+++lg+f+t eeA +a i  + ++e
  Peaxi162Scf00311g00051.1 522 GIQR-QKNGRYGAVIRDP----IRhKQVWLGTFDTVEEASEAIISKKSEFE 567
                               6654.559*********7....357*****************998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.036177240IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-9178221IPR016177DNA-binding domain
PfamPF008473.4E-4179217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-10180217IPR001471AP2/ERF domain
CDDcd000181.66E-12180217No hitNo description
SMARTSM003806.5E-5180251IPR001471AP2/ERF domain
CDDcd000181.19E-10274315No hitNo description
PROSITE profilePS5103213.09275336IPR001471AP2/ERF domain
SMARTSM003803.3E-5275329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-13276322IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-9277322IPR016177DNA-binding domain
PROSITE profilePS5103211.838519579IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-8521563IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-9522558IPR001471AP2/ERF domain
CDDcd000181.10E-10522558No hitNo description
SMARTSM003800.0012522576IPR001471AP2/ERF domain
PROSITE profilePS5103210.217618680IPR001471AP2/ERF domain
SMARTSM003800.013618673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-8626666IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-7627666IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
METDQEVLAV ADENEREEET SSCKEQNITQ VEQQPLLDDS EIFVDKVMAS TPFQYNHMDN  60
SIVNLCVHAT ELKAQSSNST NTTSTTAEIS NKADAFKKIP LIREISRVEL QSMERCCSVL  120
RKDPFKKKKQ VLLGTAKEAS KGFNCNMQQS EKLMANVDHV TESSNTTIST NTKVKKSLIG  180
IRRQKNGRYG AVIGDPIRHK QVWLGTFDTV EEASKAYFSK KSVFDDEKLS LQGNNKENKP  240
KKNCDQIQHE SLVVVSSSVP NDQTLNTASM CRTTQFLNVY KKKSGKYTTE IRHPISEKRI  300
WLGTFATAEE ASQAYQSKKL EFQKLVEEQQ QCNDKPTHDS KQDGKENLVN VDKQGNENVN  360
CEWFQPESAG GSETEQGILV EVKEVEETSS KKQKITQVIN SDDSHAAAHE GQERRSSSVE  420
QQHPEHDVLE IFVDKVKSST PFQHNQMESS IAISGLPATK LKAQNSNSSN STSTAAESSK  480
KADGKMPFIR EISQVELMSN VHVTEQSNTR STNPKVKRSL IGIQRQKNGR YGAVIRDPIR  540
HKQVWLGTFD TVEEASEAII SKKSEFENIS LQGNKENRPK KNSHHIRPEL PNVASSSVPN  600
NQTLNTASVG IGSPKTTHIT RVGKSKMTGK HMSDITNPIT KKKIWLGTFG TAEEASQAYQ  660
SKKLEFQKLL SEKQQQCNNK KTHGSKQDGK EKSVAVEQGH EYTKCEQLFQ PESAGVSDID  720
IPVSNSSNGG TDQRIDSHEI GTPEEAFQAY QFKKFDFQSS KNVELQSDMP NDPKQQGQMD  780
EDLSMGQWVQ LPGDREVKFS EELGLPIVDN YGSLLGEFSS LDDDLSIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G2XJK21e-161A0A2G2XJK2_CAPBA; Ethylene-responsive transcription factor 11
STRINGPGSC0003DMT4000317511e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-12ERF family protein