PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00312g00089.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARR-B
Protein Properties Length: 566aa    MW: 63042.8 Da    PI: 6.2072
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00312g00089.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.6e-28322376156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Peaxi162Scf00312g00089.1 322 KMKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 376
                               5689*****************.********************************96 PP
2Response_reg32.25.4e-12201261109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+ d++ + +  +r+ lek +y +v ++ +  eal  + +k   +++ ++ +   ++dG+  l+ +++++ +lp i+ +   + 
  Peaxi162Scf00312g00089.1  20 VLLLDEDSNSAAEMRSRLEKMDY-IVYSFCNENEALSAVLDKSesFHVAIVEVCAGNSDGV--LRFLESAK-DLPTIMTSNIHSL 100
                               79999999***************.***************555556***************5..77777766.9*******9999* PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ +++ +Ga +fl Kp + ++l +
  Peaxi162Scf00312g00089.1 101 STMMKCIALGAVEFLQKPLSDDKLKN 126
                               **********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-1616138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.7E-1716152No hitNo description
SMARTSM004480.003918128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.59619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.4E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.90E-1021131No hitNo description
PROSITE profilePS5129415.266319378IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-28319379IPR009057Homeodomain-like
SuperFamilySSF466891.25E-18320378IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-25322376IPR006447Myb domain, plants
PfamPF002494.0E-8325374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MICTENELLD WKDFPKGLKV LLLDEDSNSA AEMRSRLEKM DYIVYSFCNE NEALSAVLDK  60
SESFHVAIVE VCAGNSDGVL RFLESAKDLP TIMTSNIHSL STMMKCIALG AVEFLQKPLS  120
DDKLKNIWQH VVRKVVSETS LAFNAGGKDV SESIKRVEES LVSLPQLQPV KSATDDKDPN  180
ETEPFTSVSE NHNEQSPGCD KYPAPSTPQL KQGVRSVDDG DCQDHTTFST EQDSGEHDGD  240
TKSVETTYDN SLVENTVQTS PGKQGEITVK KENGSCPHQK MEADIPTSSQ SNDPGSSISQ  300
SAEPSKASGP HSSSGTKTNK KKMKVDWTPE LHKKFVQAVE QLGIDQAIPS RILELMKVEG  360
LTRHNVASHL QKYRMHRRQI LPKEVERRWP HPQPRDSVQR NYYPHKPIMA FPPYHSNHMP  420
SAGQLYPAWV PPASYPNGVQ VWGSPYYPGW QPADAWHWKP HPGLHADAWG APVMPPSYGS  480
YPPYPQNAGV YQPNGMQNRY SMLEKSFDLQ PAEEVIDKVV SEAISKPWLP LPLGLKPPST  540
ECVLDELSRQ GISTIPPQIN GSRRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-17327376655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1754450.0KC175445.1 Capsicum annuum APRR2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784220.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-137APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U7XCN50.0A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2
STRINGXP_009784214.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-134ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]