PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00314g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 417aa    MW: 47062 Da    PI: 6.8264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00314g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05351373123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C+++F++   L  H r+H
  Peaxi162Scf00314g00016.1 351 HECPYCDRVFKSGQALGGHKRSH 373
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-6278302No hitNo description
PROSITE profilePS501578.808280307IPR007087Zinc finger, C2H2
PfamPF139124.6E-7280304IPR007087Zinc finger, C2H2
SMARTSM0035511280302IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-6346373No hitNo description
PfamPF139121.1E-11351373IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619351373IPR007087Zinc finger, C2H2
SMARTSM003550.012351373IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MACHSEKDKG VLIDSNSDSE AEEEELRLRT RSKTKRYKTI VVKPSSFCLV NSSTVNNSSS  60
SVSEIDEQEQ EEVAKSLMKL SRDSRIWNCV TSVDESSDNN SVVLETKSSS TDMRFGRKDS  120
LKRVYNQDET PPTKNKEDRN LKLSVSDAEA QSESSDSAYF LEENAIVESD VSVDGFGING  180
NSKWITSKMS NAAWCDESRT HKEKGLNRNK RNTIDSSKDI TEECEDDYYW LSSYEDKCEP  240
RKRLRDSSYH PELGNESYKK MKLSHKGSEG CKKIHNKKKY ECLNCKKIFG SYQALGGHRP  300
CHKKANSYVE SINGTGENSL DADHDGKPFS AVKEPSYNPE KKIKPKKVKG HECPYCDRVF  360
KSGQALGGHK RSHFIGGSFR NLNQSSAAKK EADDLLDLNL PAPIDDEDNE HAHFVSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240261RKRLRDSSYHPELGNESYKKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0036720.0AB003672.1 Petunia hybrida mRNA for ZPT4-3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546658.11e-173PREDICTED: uncharacterized protein LOC107846898
TrEMBLP937190.0P93719_PETHY; ZPT4-3
STRINGPGSC0003DMT4000727961e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-16C2H2-like zinc finger protein