PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00320g00212.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 1131aa    MW: 125004 Da    PI: 6.1866
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00320g00212.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22151252199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  Peaxi162Scf00320g00212.1 151 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDS 234
                               99*****************************9545444.38******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++++l+++++r+
  Peaxi162Scf00320g00212.1 235 VLFI--RDEKQQLLLGIRRA 252
                               ****..5688889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-43141280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41142266IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-19150242No hitNo description
PROSITE profilePS5086311.97151253IPR003340B3 DNA binding domain
SMARTSM010195.6E-23151253IPR003340B3 DNA binding domain
PfamPF023622.5E-20151252IPR003340B3 DNA binding domain
PfamPF065074.0E-34277360IPR010525Auxin response factor
PROSITE profilePS5174528.08410201104IPR000270PB1 domain
PfamPF023098.2E-710211105IPR033389AUX/IAA domain
SuperFamilySSF542771.47E-610371098No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1131 aa     Download sequence    Send to blast
MYGVLFWVGG GGLMFLENED VLINKCYELN GGFDFLCAGE KKSINPELWQ ACAGPLVNLP  60
AAGTHVVYFP QGHSEQVAAS MKKDVDAQIP NYPNLPSKLV CLLHNVTLHA DPETDEVYAQ  120
MTLQPVPSFD KEALLRSDLS MKANKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  180
DYSMQPPAQE LVARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD  240
EKQQLLLGIR RANRQPTNLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF  300
VIPLAKYYKA TYSSQVSLGM RFRMMFETEE SGTRRYMGTI TGISDLDAVR WKNSQWRNLQ  360
VGWDESTAGE RRNRVSIWEI EPVTAPFFIC PTPPFFRSKR PRLPGMPDDD GSDLDGLFKR  420
TMPWLGDDFG MKDPQGLPGL SLVQWMNMQQ NPSLANSMQP NYLHSLSGSM LQNVGGGADL  480
SRQLGLPAPQ LPQQNTLQFG TQRPTQQGQQ LDQLQKMPAA TLSPVGSMMQ SQQQLSDISQ  540
QPRQSLINQS GPTNQVQAQL LQAQNLVQSQ NALQQQQSLQ NQLQRNLPQN LPQPQQIMNQ  600
AQQQSFMPSQ PTDPLNQQLH FSDNQLQLQF LQKLHQQQQS LLAQQSVLQQ PSQLGPMHDQ  660
QKQLFDVSQN FSRSLATSQM LDMAQTTSTS TSLSQSQVVQ QQMTRNNSQS NLRFAQPNQL  720
PKLQQQHQQP GMLPELPGQV SQNIPPTTNQ LSTNCSSLLT GAAGGGQSVV TDDIPSCSTS  780
PSTNNCQNAV LPIMNGRMHR GMAAGDEATQ SSVPLLSSSG LEVMSANSNL VKDLQHKSDV  840
KPSLNISKSQ NHGFLAPQTY LNTAGPQMDY LDSSSSATSV CFSQNDVQLP QTTNPMSFCS  900
QPVLFRDSQD GEVHADPRNS VAFGANMDNQ LGMPMMPDPL ITNSLAGSRK ELSNNISSGG  960
GMLSSYENPK DAQPELSTSM VSQSFGVPDM AFNSIDSTIN EDSFMNRGAW APPPQMPRLR  1020
TYTKVYKRGA VGRSIDIARY SGYEELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL  1080
LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL DGDFGSGVQN QACSSSDGGN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1684038147388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580257.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2G3BYJ10.0A0A2G3BYJ1_CAPCH; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19