PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00326g00321.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 570aa    MW: 65732.7 Da    PI: 10.1822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00326g00321.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-13531301099
                               HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                        B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                +k+g l +p  f+ ++ +g ++e     +  +  ++W vkl  ++++    l++GW++F+++++L  gD++vF+++g++ef   
  Peaxi162Scf00326g00321.1  53 GFKNG-LKIPTGFL-KYlKGHEHE---RAILRRGCKKWLVKL--NGQR----LEEGWEKFAEQHDLHLGDILVFRHEGDMEF--D 124
                               55555.********.564555444...34455677*******..8887....************************999999..9 PP

                               EEEE-S CS
                        B3  94 vkvfrk 99 
                               v++f++
  Peaxi162Scf00326g00321.1 125 VSIFDS 130
                               999986 PP
2B360.52.9e-19198278690
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               ++++ +++g l+lpk+fa ++g+ + ++  l+l+de  rsW+++l+y+k+    ++++GW++Fv +n LkegD ++F+ +  s++
  Peaxi162Scf00326g00321.1 198 VREYCFSRGHLYLPKQFAIANGLTN-KKCNLILKDEGQRSWNLNLSYWKTV--AYIGDGWSKFVVDNCLKEGDCIMFEIVT-SGE 278
                               678999***************8875.4459***************999997..88***********************765.444 PP
3B340.25.9e-13321405489
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                                +++++  k + l+lp +fa+ +g+ +++  +++l+de  r W+  +  r +++++ + +GW++F  angL++gD   F+l+++ 
  Peaxi162Scf00326g00321.1 321 STIKPYCIKDSVLYLPLDFAKPNGLMNRK-CEMILKDEAQRPWSGWI-GRVSGRHFGIIRGWSKFRAANGLQVGDAYKFELIKNg 403
                               46789999999************877655.59***********9888.46666668899**********************9874 PP

                               SE CS
                        B3  88 se 89 
                               + 
  Peaxi162Scf00326g00321.1 404 KI 405
                               54 PP
4B3505.4e-16453541598
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++++ +++ l++p++fa e  +++++  +++++d + rsW+ kl    +++r+++++GW +F+  n LkegD ++F++++ ++
  Peaxi162Scf00326g00321.1 453 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWHKFCIVNCLKEGDRLMFEMVS-NG 532
                               57889999999*******9998555444.4999999.779******..999999*************************988.66 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               +++v++++ 
  Peaxi162Scf00326g00321.1 533 EKPVLRLYG 541
                               667887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-2139133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-1840133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.50543131IPR003340B3 DNA binding domain
CDDcd100175.01E-1444129No hitNo description
SMARTSM010191.1E-1346131IPR003340B3 DNA binding domain
PfamPF023628.1E-1054130IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59193287IPR003340B3 DNA binding domain
SMARTSM010192.3E-19193287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-20193284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-19195284IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-17197280IPR003340B3 DNA binding domain
CDDcd100177.56E-18204272No hitNo description
SuperFamilySSF1019361.55E-16313405IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-15313405IPR015300DNA-binding pseudobarrel domain
CDDcd100174.13E-13317403No hitNo description
PROSITE profilePS5086311.505318413IPR003340B3 DNA binding domain
SMARTSM010196.0E-15318416IPR003340B3 DNA binding domain
PfamPF023621.1E-11320406IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19446538IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-20447539IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-14448540No hitNo description
PROSITE profilePS5086312.407449543IPR003340B3 DNA binding domain
SMARTSM010195.2E-15450543IPR003340B3 DNA binding domain
PfamPF023622.2E-14453540IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MKVPPKKPHF FKPIVPGLKN GLKIPTXMGR FIFLAAMKVP PKKPHFFKPI VPGFKNGLKI  60
PTGFLKYLKG HEHERAILRR GCKKWLVKLN GQRLEEGWEK FAEQHDLHLG DILVFRHEGD  120
MEFDVSIFDS SQCNRKYAEY LQEKAQEAHT VEETFKNFEF KEKRRPKDIK SSKKDSFHAK  180
AATNHRKPLG QSRCVCTVRE YCFSRGHLYL PKQFAIANGL TNKKCNLILK DEGQRSWNLN  240
LSYWKTVAYI GDGWSKFVVD NCLKEGDCIM FEIVTSGETP IWKFQVVANG ETPMSKFQGS  300
GDFIRKKPAA SGEDDLPYFI STIKPYCIKD SVLYLPLDFA KPNGLMNRKC EMILKDEAQR  360
PWSGWIGRVS GRHFGIIRGW SKFRAANGLQ VGDAYKFELI KNGKIPEAYF HHLRGSLDSQ  420
EKPESNIKKS GKVFPNVEAS KDMHLSHPHF ICTIQPSSIS RHYLRVPRQF ALESCLNNRK  480
CEIIVRDERR SWTCKLYTSG RRTYIGSGWH KFCIVNCLKE GDRLMFEMVS NGEKPVLRLY  540
GKQFGKDDKN HRSNRQDNKT VGVHGQGKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625364.11e-174PREDICTED: B3 domain-containing protein REM14-like
TrEMBLA0A1U7YQU11e-171A0A1U7YQU1_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009597618.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-53B3 family protein