PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00330g00418.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 547aa    MW: 60324.5 Da    PI: 7.6117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00330g00418.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13124164748
                               HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                Ed++++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Peaxi162Scf00330g00418.1 124 SEDDKIIELVAKYGPIKWSVIAKSLP-GRIGKQCRERWHNHL 164
                               69************99**********.*************97 PP
2Myb_DNA-binding56.37.5e-18170213146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++WT eE++ lv+a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00330g00418.1 170 KDAWTLEEELALVNAHRVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 213
                               679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.14655102IPR017877Myb-like domain
SMARTSM007173559104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-883115IPR009057Homeodomain-like
SuperFamilySSF466891.06E-1683159IPR009057Homeodomain-like
PROSITE profilePS5129420.119103164IPR017930Myb domain
SMARTSM007175.9E-12107166IPR001005SANT/Myb domain
CDDcd001671.60E-13110164No hitNo description
Gene3DG3DSA:1.10.10.603.6E-23123171IPR009057Homeodomain-like
PfamPF002496.0E-13124164IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-28143221IPR009057Homeodomain-like
PROSITE profilePS5129427.364165219IPR017930Myb domain
SMARTSM007178.6E-17169217IPR001005SANT/Myb domain
PfamPF002499.9E-16170213IPR001005SANT/Myb domain
CDDcd001679.09E-13172215No hitNo description
Gene3DG3DSA:1.10.10.605.0E-23172219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDELMKLEGC CTENKQSTAA MSSSVSENSG SLTVKSLEVC SPTPTSPAHR RATGPIRRAK  60
GGWTPEEEEK KSWLCLTTDA YAAEFFTDRS EVQCLHRWQK VLNPELVKGP WTQEAGFSFP  120
LYQSEDDKII ELVAKYGPIK WSVIAKSLPG RIGKQCRERW HNHLNPNIRK DAWTLEEELA  180
LVNAHRVYGN KWAEIAKVLP GRTDNSIKNH WNSSLKKKLD FYLATGNLPP VARDVLQNGC  240
KDTVKTASAE KALVCSHKGS DSTEVASSGT TDVCKLENGD KNHQDTKLLV ANIGASISGP  300
QNGSDSEVVR WEAESPVIDT IHVKPITQIR FEGYGINSEV DQFKVIETPF SCEIPTCGTL  360
YYEPPQLGSC ISVDSDHLNI RSRLCESDAS PSLSPSSFST PSSLKGSSLY AQTPESILKI  420
AARSFPNTPS IFRKRKLSST SSNKIGNADG DTSKDEVHDA CEEKQTDSSE KYGMHRESSS  480
RNPSYNGIGP CNTKAFNASP PYRLRSKRKS IFKSVEKRLK FAFDNEQPDS TGISDSAAKE  540
TSQVAKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-59592195159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-59592195159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506519KRKSIFKSVEKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464213.10.0PREDICTED: uncharacterized protein LOC107787190 isoform X1
TrEMBLA0A1S3ZIQ20.0A0A1S3ZIQ2_TOBAC; uncharacterized protein LOC107787190 isoform X1
STRINGXP_009787902.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-133myb domain protein 3r-5