PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00334g00123.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 222aa MW: 25703.8 Da PI: 6.9653

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00334g00123.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.2	2.3e-19	96	146	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +++g Peaxi162Scf00334g00123.1 96 HYVGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFSMRG 146 79*****.******44465..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.9E-30	95	154	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-13	96	146	IPR001471	AP2/ERF domain
CDD	cd00018	1.63E-30	96	154	No hit	No description
PROSITE profile	PS51032	22.352	96	154	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-38	96	160	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-22	96	155	IPR016177	DNA-binding domain
PRINTS	PR00367	7.5E-10	97	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.5E-10	120	136	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEMKISSHDQ YFPNLDFFQD QYSFLSNELI FMDYDNLTNP WELDSDLNDR EHQVQRSSSY 60 SETINSSKGS NELEEVTSYS IKRKNANKQE KDDERHYVGV RKRPWGKYAA EIRDSTRNGI 120 RVWLGTFDTA EEAALAYDQA AFSMRGTSAL LNFPMGKVQE SLEKIKYSCQ DGLSPAAALK 180 ETHKMRMKNV KRKRNRKKKK TVLVFEDLGV DLLEELLVST SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-29	95	155	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240194	1e-100	AC240194.8 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-118f23 map 10, complete sequence.
GenBank	AC245345	1e-100	AC245345.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35f20 map 10, complete sequence.
GenBank	HG975522	1e-100	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016465665.1	1e-89	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	3e-52	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A1S3ZM98	3e-88	A0A1S3ZM98_TOBAC; ethylene-responsive transcription factor 1B-like
STRING	XP_009625479.1	8e-89	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	1e-35	ethylene response factor 1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]