PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00337g00718.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARR-B
Protein Properties Length: 504aa    MW: 54728.8 Da    PI: 7.5945
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00337g00718.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.13.4e-27178231155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G+++A Pk+ilelm+v+gLt+++v+SHLQk+Rl
  Peaxi162Scf00337g00718.1 178 KPRVVWSVELHQQFVSAVNQL-GAKNAGPKRILELMNVPGLTRDNVASHLQKFRL 231
                               79*******************.9*******************************8 PP
2Response_reg59.51.8e-201610521109
                               TTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
              Response_reg  21 egyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                               +g +++++++++  al+ll+e++  +D++l D+ mp+mdG++ll+ i  e  +lp+i++++ g  + + + ++ Ga d+l Kp+ 
  Peaxi162Scf00337g00718.1  16 HGTTHITTCTQAAVALNLLRERRgsFDIVLSDVHMPDMDGFKLLELIGLEM-DLPVIMMSSDGRTNVVMRGVQHGACDYLIKPIR 99 
                               6778999************999999**********************6644.8******************************** PP

                               HHHHHH CS
              Response_reg 104 peelvk 109
                                eel++
  Peaxi162Scf00337g00718.1 100 DEELRN 105
                               ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004482.8E-131107IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.0091111IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.42E-2516117IPR011006CheY-like superfamily
PfamPF000723.5E-1716106IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.9E-3117118No hitNo description
CDDcd001561.41E-2021110No hitNo description
SuperFamilySSF466892.15E-18175235IPR009057Homeodomain-like
PROSITE profilePS5129412.116175234IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28176236IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-22178231IPR006447Myb domain, plants
PfamPF002492.3E-7180229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTKFLSRPLL LKRKMHGTTH ITTCTQAAVA LNLLRERRGS FDIVLSDVHM PDMDGFKLLE  60
LIGLEMDLPV IMMSSDGRTN VVMRGVQHGA CDYLIKPIRD EELRNIWQHV VRKRSIKEHE  120
YSGSLDDNDR HKRGSDDAEC ASSVIEGADG VKPQKKKRDA KEEDHTEIEN DEPSTAKKPR  180
VVWSVELHQQ FVSAVNQLGA KNAGPKRILE LMNVPGLTRD NVASHLQKFR LYLKRLEGVA  240
QQQGGLPRIF CGPSEQNPKL GSLGRCDSQA QAASGQLSPE TLTALHAELL GRSTSSLALP  300
AVVEQPHLLQ APLQQVKCIP ADQVMAYSQP LMKWPPSISN SKHLSQPIIS AEDSPDNFQV  360
GDSPASSNQA CSLSKSLVID YSILSSQSNN SSGVVQVLDG EFKTACGLNR HSSAGSLSPS  420
VSASSAYADN SFGLQHPNSS SVFGTSKQLP GLPNPPVSYS SRSSQDLDQG PMRYPGIGKG  480
ASIPSRFAVD DSGSPMCNLN TSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-20178234157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4125410.0JF412541.1 Nicotiana tabacum RRB1 type-b response regulator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776289.10.0PREDICTED: two-component response regulator ARR2-like isoform X3
RefseqXP_016495888.10.0PREDICTED: two-component response regulator ORR21-like isoform X3
SwissprotA2XE311e-115ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-115ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A3Q7FVW70.0A0A3Q7FVW7_SOLLC; Uncharacterized protein
STRINGXP_009599319.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-94response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]