PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00345g00021.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 603aa    MW: 67254.8 Da    PI: 6.5243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00345g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12433479455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Peaxi162Scf00345g00021.1 433 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 479
                               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5648236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18432493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-14432483No hitNo description
PfamPF000103.4E-10433479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MVTGNMLWSD EDKAMVMAVM GKEAFEYLMS SSVSAECSLM AIGNDQNLQT KLSDLVERPN  60
AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPRDGEEH EVKRIFSLRL EDEAQQRMRK  120
RVLQKLHMLF GGTDDDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS  180
DALKSSLDYC ARSFLAKSAG IQTVVLVPTD GGVVELGSVR SIPESLELLQ SIKSCFSSFL  240
ALVRAQQAAG IAVTDKKDGN NSPFNSAVIE RPEGNPKIFG QELNSGTQFR EKLAVRKAEE  300
RPWDIYQNGN RMPFMNAHNG LNAASWSQFS NVKPGKPVEL YSPQTPLHNL QGFVNGGREE  360
HRSNNFQHQK PASMQIDFTG ATSRPVISPA HTVESEHSDV EASCKEERAG PVDEKRPRKR  420
GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITELQK  480
KLRDMESERE ILGSTSRDAL ASEDSPNSEI QIREPDINVE ASNDEVIVRV SCPLETHPVS  540
RVIQIFKEAQ INVVESRLSA GNDTVFHTFV IKSSGSEQLT KEKLLAALSS EPKLLRQFQS  600
VGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29427489264Transcription factor MYC2
5gnj_B5e-29427489264Transcription factor MYC2
5gnj_E5e-29427489264Transcription factor MYC2
5gnj_F5e-29427489264Transcription factor MYC2
5gnj_G5e-29427489264Transcription factor MYC2
5gnj_I5e-29427489264Transcription factor MYC2
5gnj_M5e-29427489264Transcription factor MYC2
5gnj_N5e-29427489264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414422KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781532.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_016459177.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S3Z4N70.0A0A1S3Z4N7_TOBAC; transcription factor bHLH13-like
TrEMBLA0A1U7WNL80.0A0A1U7WNL8_NICSY; transcription factor bHLH13-like
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]