PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00346g00002.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 240aa MW: 27711.7 Da PI: 10.5144

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00346g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.8	5.1e-10	1	54	36	89
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 ++l+de r W+v + r +++++ + +GW++F angL++gD F+l+++ + Peaxi162Scf00346g00002.1 1 MILKDEAQRPWSVWI-GRVSGRHFGIIRGWSKFRAANGLQVGDAYKFELIKNgKI 54 5799********9.45555558899********************987554 PP
2	B3	52.2	1.1e-16	123	211	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++++ +++ l++p++fa e +++++ +++++d + rsW+ kl +++r+++++GW +F+ n LkegD ++F++++ ++ Peaxi162Scf00346g00002.1 123 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWHKFCIVNCLKEGDRLMFEMVS-NG 202 57889999999*****9998555444.4999999.779**..999999***********************988.66 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v++++ Peaxi162Scf00346g00002.1 203 EKPVLRLYG 211 667887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-10	1	54	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.055	1	62	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-8	1	56	IPR003340	B3 DNA binding domain
CDD	cd10017	3.23E-9	1	52	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.4E-9	1	54	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.3E-20	116	208	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.82E-20	117	209	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.08E-15	118	210	No hit	No description
PROSITE profile	PS50863	12.407	119	213	IPR003340	B3 DNA binding domain
SMART	SM01019	5.2E-15	120	213	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-15	123	210	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MILKDEAQRP WSVWIGRVSG RHFGIIRGWS KFRAANGLQV GDAYKFELIK NGKIPEAYFH 60 HLRGSPSLQP EGKKKDFDVK RISNKGLDSQ EKPESNIKKS GKVFPNVEAS KDMHLSHPHF 120 ICTIQPSSIS RHYLRVPRQF ALESCLNNRK CEIIVRDERR SWTCKLYTSG RRTYIGSGWH 180 KFCIVNCLKE GDRLMFEMVS NGEKPVLRLY GKQFGKDDKN HRSNRQDNKT VGVHGQGKEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792889.1	2e-70	PREDICTED: B3 domain-containing protein REM7-like
Refseq	XP_016548731.1	3e-70	PREDICTED: B3 domain-containing protein REM10-like isoform X4
TrEMBL	A0A1U7Y0W9	4e-69	A0A1U7Y0W9_NICSY; B3 domain-containing protein REM7-like
TrEMBL	A0A1U8EQP7	8e-69	A0A1U8EQP7_CAPAN; B3 domain-containing protein REM10-like isoform X4
STRING	XP_009792889.1	7e-70	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	4e-20	B3 family protein