PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00346g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 166aa    MW: 19461.4 Da    PI: 10.3889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00346g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-1417941099
                              HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                               +k+g l +p  f+ ++ +g ++e     +  +  ++W vkl  ++++    l++GW++F+++++L  gD++vF+++g++ef   v+
  Peaxi162Scf00346g00005.1 17 GFKNG-LKIPTGFL-KYlKGHEHE---RAILRRGCKKWLVKL--NGQR----LEEGWEKFAEQHDLHLGDILVFRHEGDMEF--DVS 90
                              55665.********.564555444...34455677*******..8887....************************999999..999 PP

                              EE-S CS
                        B3 96 vfrk 99
                              +f++
  Peaxi162Scf00346g00005.1 91 IFDS 94
                              9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-22497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-19497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505795IPR003340B3 DNA binding domain
CDDcd100178.44E-15893No hitNo description
SMARTSM010191.1E-131095IPR003340B3 DNA binding domain
PfamPF023627.8E-111894IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKVPPKKPHF FKPIVPGFKN GLKIPTGFLK YLKGHEHERA ILRRGCKKWL VKLNGQRLEE  60
GWEKFAEQHD LHLGDILVFR HEGDMEFDVS IFDSSQCNRK YAEYLQEKAQ EAHTVEETFK  120
NFEFKEKRRP KDIKSSKKDS FHAKAATNHR KPLGQSRCTK DKGRGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623217.12e-75PREDICTED: B3 domain-containing protein REM5-like isoform X1
RefseqXP_018623218.17e-76PREDICTED: B3 domain-containing protein REM5-like isoform X2
TrEMBLA0A1S3ZKL32e-69A0A1S3ZKL3_TOBAC; B3 domain-containing protein REM10-like
TrEMBLA0A1U7YFN52e-69A0A1U7YFN5_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009801953.13e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-20B3 family protein