PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00350g00128.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 322aa    MW: 38259.8 Da    PI: 10.0764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00350g00128.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.3e-0929881173
                      FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73
                               Fsvrk+  ++s+++++i+ ++f Cskeg++++++ +   ++++r etr  Ck  +  +k+k+
  Peaxi162Scf00350g00128.1 29 RFSVRKNWISRSRKDKTIIGQEFICSKEGFHSKKSLE---SNQQRDETRKCCKVIIFWQKKKK 88
                              6*******************************99877...89999*********999888864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-73088IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.283154192IPR007527Zinc finger, SWIM-type
SMARTSM005750.0093167194IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKNRECPILV WNSNHLILYL NFILNMWSRF SVRKNWISRS RKDKTIIGQE FICSKEGFHS  60
KKSLESNQQR DETRKCCKVI IFWQKKKKES GQDSKAKLKT FYPMEDEAAK AYIRKIFKIF  120
QEELIMCQTF VSEKIEVKDG MHIYKVHEFE RQKTRLHVRL NLELKNAICS CHKFEFMGIL  180
YRHVLIVFIK KQIHLLPPCY LLDRWTIFGT KEKFVKVSYK QHNLKPSTLS KELDELRYEL  240
ENDIVCIGQI NESNMELNIG EQSQNVTLLD PLCAANKGLV WKILGRLKEI LPKNRKGKSE  300
AQSRQGNKDL MRAALYPYRQ DF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883762.16e-72protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886302.11e-68protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886339.13e-69protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7EY024e-68A0A3Q7EY02_SOLLC; Uncharacterized protein
TrEMBLD5MNY51e-68D5MNY5_SOLLC; Transposon-like element Lyt2-1 DNA
STRINGSolyc01g110070.1.11e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1-related sequence 5