PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00351g00108.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 507aa    MW: 55650.1 Da    PI: 6.8544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00351g00108.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-133343731155
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               rRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Peaxi162Scf00351g00108.1 334 RRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 373
                               8******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-15314379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15314382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-16319377No hitNo description
SMARTSM003534.7E-13322378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.037323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-11334373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMLLILLLGT SFDHELVELL WRNGEVVLHS QTHKKQGYDP NDCRQVNKHD QSTIRTSVSC  60
GNQANLIQDD ETISWLNCPI DDPFDKEFCS PFLSEISTNP IEADKITRQS EDNKVFKFDP  120
FEVNHVLPHS HHSGFDPNPM PPPKYHNSGS AQQQHVGGLQ KGVNFPTPVR SSNVQLGGKE  180
VSNMMLHDVK EGSVMTVGSS HCGSNQVAND IDTSRFSSST NRGLSTAMIT DYTGKVSPQS  240
DTMDRDTFEP ANTSSSGGSG SSYARTCNQS TATNSHSHKR KSREGEEPEC QSKSGDLDSA  300
GGNKSAQKSG TARRSRAAEV HNLSERVEFV GLTRRRDRIN EKMKALQELL PHSTKTDKAS  360
MLDEAIEYLK SLQMQLQMMW IGGGMASMMF PGVQHYMSRM GIGMGPPTVS SIHNAMNLAR  420
LPLVDPAIPL TQAAPNQAAM CQTSILNAVN YQRQLQNPNF SDQYASYMGF HPLQGASQPI  480
NIFSLGSHSA QQSQQIPPPT NSNAPTT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580439.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A1U8HIU30.0A0A1U8HIU3_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z1M50.0A0A2G2Z1M5_CAPAN; transcription factor PIF4
STRINGSolyc07g043580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-55phytochrome interacting factor 4