PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00351g00820.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 906aa    MW: 100468 Da    PI: 6.4759
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00351g00820.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-23128242199
                               EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                               f+k+lt sd++++g +++p++ ae+                    +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+
  Peaxi162Scf00351g00820.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVpstetisivvffslsfldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWS 211
                               99*************************9999999999999999986666675.9******************************* PP

                               HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                Fv+a++L +gD v+F   ++++ +l+++++r+
  Peaxi162Scf00351g00820.1 212 VFVSAKRLVAGDAVIFI--WNENNQLLLGIRRA 242
                               *****************..7888889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-43113270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-38121256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-19127241No hitNo description
PROSITE profilePS5086311.942128243IPR003340B3 DNA binding domain
PfamPF023621.4E-21128242IPR003340B3 DNA binding domain
SMARTSM010194.8E-21128243IPR003340B3 DNA binding domain
PfamPF065071.1E-33267350IPR010525Auxin response factor
PROSITE profilePS5174516.069765857IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MRVSSSGFNP QSEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPG LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSAQEQKDV CLLPAELGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVPSTETIS IVVFFSLSFL DYSQQPPCQE  180
LIAKDLHGNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDAVIFIWN ENNQLLLGIR  240
RANRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF FNPRASPSEF VIPLAKYAKA  300
VYHTRISVGM RFRMLFETEE SSVRRYMGTI TGISDLDSVR WPNSHWRSVK VGWDESTAGE  360
RQPRVSLWEI EPLTTFPMYP SPFSLRLKRP WPSGLPSLPG FPNGDMTMNS PLSWLRGDMG  420
DQGIQSLNFQ GFGVAPFMQP RMDASMLGLQ PDILQTMAAL DPSKLANQSL MQFQSIPSSS  480
ASLSQSQMLQ SQQNLLQGFS ENQLISQAQM LQQQLQRRQS YNDQQQLLQP QLQQHHQVNS  540
QFQHQQQTKA FSNLSQMAPA TQPQLSHLQV LGSSGSQQTF SDILGNHGNA SANSTMQSLL  600
SSFSRDGASA VLSMHETHPQ VSSSSSSKRI ALESQVPSRV TPFAVPQAED VIAHNTKVSD  660
LSSLLPPFPG REFSDYRGVP DSQSNALYGF NSDSLNNILQ TDMSNMKGST GDNASLSIPY  720
ATSTFTSNLG NEYPLNSDMT TSSCVDESGF LQSSENGDQE NPTNRTFVKV HKSGSFGRSL  780
DISKFSSYHE LRSELARMFG LEGLLEDPER SGWQLVFVDP IRRDDCYPFN SSVVDRLRPL  840
EFVNNVWYIK ILSPLEVQQM GKEGLDLPNT VQTQRLPSNG NGCDDYMNQK DSRNTMNGIP  900
LGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1521637147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249244.10.0PREDICTED: auxin response factor 6-like isoform X1
RefseqXP_019249245.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1J6IHI70.0A0A1J6IHI7_NICAT; Auxin response factor
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]