PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00354g00068.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 256aa    MW: 28763.2 Da    PI: 5.685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00354g00068.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-132776246
                              SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46
                              g +T+eEd +++ + +q G+       +W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00354g00068.1 27 GGFTEEEDNIILTLYTQIGSSsilvkiRWSVIASNLQ-GRTDNDVKNYWNT 76
                              569**********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.368120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-12632IPR009057Homeodomain-like
SuperFamilySSF466894.05E-20682IPR009057Homeodomain-like
PROSITE profilePS5129417.8262182IPR017930Myb domain
SMARTSM007172.3E-102580IPR001005SANT/Myb domain
PfamPF002491.3E-102776IPR001005SANT/Myb domain
CDDcd001674.08E-102978No hitNo description
Gene3DG3DSA:1.10.10.603.4E-163379IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MFSGLKRCGK SCRLRWLNYL RPDIKHGGFT EEEDNIILTL YTQIGSSSIL VKIRWSVIAS  60
NLQGRTDNDV KNYWNTKLKK KLLEAAATNT LSNSNAFTHD KTYMNTIPRT CYGTDSTNCS  120
NMKFYTFSHA MDTNLLGHSS RQLFPLLPEL MEIQENGILQ QAEEVKCSSL ENSFASFSGN  180
IGVVQGNEED GSLMSLSSGI SSSYYYDLLN GFNFQENVVM GVNTNFSNYS SNSNLLQLQA  240
NIPDSTDQPF KGFETY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1778240108B-MYB
1h8a_C1e-1678260128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799606.12e-68PREDICTED: transcription factor RAX2-like
RefseqXP_016453189.12e-68PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S3YLQ24e-67A0A1S3YLQ2_TOBAC; transcription factor RAX2-like
TrEMBLA0A1U7YCC44e-67A0A1U7YCC4_NICSY; transcription factor RAX2-like
STRINGXP_009799606.17e-68(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-33myb domain protein 36