PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00354g00084.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 382aa    MW: 43057.2 Da    PI: 6.6512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00354g00084.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07128149526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C++f+++ +Ck Gd C FaHg
  Peaxi162Scf00354g00084.1 128 ACPDFRKGNICKKGDGCEFAHG 149
                               5******99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.52175112IPR000571Zinc finger, CCCH-type
SMARTSM003560.004123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.16E-5123153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493124151IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5128149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4129151IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.183159183IPR000571Zinc finger, CCCH-type
SMARTSM003568.5159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIGEINHPDP TVDIPPWTYP DDQTADMHYY KTLSPNANAN SCLNFTDDYA LKAFQRYLPS  60
NNNVTELDYE DFDVPMDMYT CDNFRIYEFK IRKCARGKSH DWTECPYAHP CEKARRRDPR  120
KYHYSGIACP DFRKGNICKK GDGCEFAHGV FECWLHPSRY RTQPCKDGPH CKRKVCFFAH  180
SPEQLRVLSP RTDSSSYDGS PRGGVQFGSV GYFSKSSYLT SSPDSGSPPT ESPPMSPMTG  240
SPLSRSLGSS SVNEILASLR QLQLNKVKSM PCSSWNNNIH IGCSSGLGSP RLPVTRSGFI  300
SLPSTPTQVV NRPGLCFDQW DKTVCEEEEP VMERVESGKG LRAKMFQKLS KENPLDGPDL  360
NPNPYQFEDP NPDVDWVSDL IQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608132.11e-174PREDICTED: zinc finger CCCH domain-containing protein 20-like
RefseqXP_016445906.11e-174PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-114C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3Y1A11e-172A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009608132.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-98C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]