PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00358g00058.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 458aa MW: 49773.7 Da PI: 7.2783

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00358g00058.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.5e-16	43	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W I +++g ++t+ q++s+ qk+ Peaxi162Scf00358g00058.1 43 REKWTEEEHKRFVEALKLYGRA-WGQIEEHVG-TKTAIQIRSHAQKF 87 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.18E-16	37	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.832	38	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-8	39	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-16	41	90	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-12	42	90	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-13	43	86	IPR001005	SANT/Myb domain
CDD	cd00167	2.75E-9	45	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MDHASSVISS KVETVATQPR AVTSPRNENI PKVRKPYTIR KQREKWTEEE HKRFVEALKL 60 YGRAWGQIEE HVGTKTAIQI RSHAQKFFAK VARDSDNNGD GSLNVMDIPP PRPKKKPLHP 120 YPRKMVDSPI TDQGNSAQPE KSPFPNASPK GRDTCSPVSV LLASDSDLFE PSVAKRKSAH 180 FAPASCTLDA HSGTISRGND DDCLTANSTI EEEVLVTKVV ADSCCPVANP TTKCNMVSKD 240 TSCSGEKLAV EAPVASIKLF GQTVFVPDAP NLDSESPENC SSSLSSASVD ENKKSNENLL 300 PSFPSNQANT QFVLPMVPGS MIAPPCLSPQ NILDDNSTNI ASLAATMSWC SWYQDLLYRY 360 ISSCTQTVMG SYAPCQGQNS EEPQREGSSS GSNIGSTSEV DDGKRNCDAV ESKCTSRSEK 420 QGCTKGFIPY KRCLAERDGN LSGAIAEKRR EQRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MDHASSVISS KVETVATQPR AVTSPRNENI PKVRKPYTIR KQREKWTEEE HKRFVEALKL  60
YGRAWGQIEE HVGTKTAIQI RSHAQKFFAK VARDSDNNGD GSLNVMDIPP PRPKKKPLHP  120
YPRKMVDSPI TDQGNSAQPE KSPFPNASPK GRDTCSPVSV LLASDSDLFE PSVAKRKSAH  180
FAPASCTLDA HSGTISRGND DDCLTANSTI EEEVLVTKVV ADSCCPVANP TTKCNMVSKD  240
TSCSGEKLAV EAPVASIKLF GQTVFVPDAP NLDSESPENC SSSLSSASVD ENKKSNENLL  300
PSFPSNQANT QFVLPMVPGS MIAPPCLSPQ NILDDNSTNI ASLAATMSWC SWYQDLLYRY  360
ISSCTQTVMG SYAPCQGQNS EEPQREGSSS GSNIGSTSEV DDGKRNCDAV ESKCTSRSEK  420
QGCTKGFIPY KRCLAERDGN LSGAIAEKRR EQRARVCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151804	9e-32	AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771665.1	1e-171	histone H2A deubiquitinase MYSM1-like isoform X2
TrEMBL	A0A1U8FXR3	1e-169	A0A1U8FXR3_CAPAN; protein REVEILLE 1-like isoform X2
STRING	Solyc03g098320.2.1	1e-167	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	9e-36	MYB_related family protein