PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00358g00081.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ZF-HD

Protein Properties

Length: 163aa MW: 18407.5 Da PI: 8.3747

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00358g00081.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.4	1.4e-27	9	60	5	59
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeCl+NhAa+lG +a DGCgEf+ + ++ + al+CaACgCHRnFHR+ +++ Peaxi162Scf00358g00081.1 9 LYKECLRNHAANLGNYANDGCGEFTLD---DTLPGALQCAACGCHRNFHRKVTNY 60 7***********************8...6679***************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.4E-23	9	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.865	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-15	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-22	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.92E-17	74	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-26	83	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.4E-27	88	145	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEGDNTNDLY KECLRNHAAN LGNYANDGCG EFTLDDTLPG ALQCAACGCH RNFHRKVTNY 60 NRDPEITTDI IDYGGGSNGR LSLERSGKKR FRTKFTTDQK EKMLEFAAKL GWKLQRTDQE 120 DEIERFCKWV GVSRKVFKVW MHNHKSSSST SSISTGNASS LTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-19	89	151	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318316.3	4e-81	zinc-finger homeodomain protein 9
Swissprot	Q9M9S0	1e-36	ZHD4_ARATH; Zinc-finger homeodomain protein 4
Swissprot	Q9SB61	6e-37	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2K1Y8K4	8e-80	A0A2K1Y8K4_POPTR; Uncharacterized protein
STRING	POPTR_0012s03770.1	2e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11865	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-38	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]