PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00369g00132.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 199aa    MW: 23104.6 Da    PI: 9.1091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00369g00132.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.4e-181664250
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               i++k  r+v+fskR++ ++KK  ELS+L  a++ v++fs++gk y+y 
  Peaxi162Scf00369g00132.1 16 LIKSKEARYVSFSKRKASLFKKVDELSTLMRADIGVVLFSPSGKSYTYV 64
                              69**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.474767IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-23766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-23779IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-14929IPR002100Transcription factor, MADS-box
PfamPF003194.8E-191763IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERKRSMGRQ KIEMKLIKSK EARYVSFSKR KASLFKKVDE LSTLMRADIG VVLFSPSGKS  60
YTYVSTNIEE IIDKFLLWKQ DESDDDESDS DNADKLIDVF NAFDDLRDEI VTLNELEKNR  120
RRRYKIIHPD LKIPHDKNRL VRLVECKLQL DKLKKMTIRI QELMPSTSRS ALSTSAKSHC  180
NFDLNVLPVL DEGECSGTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513680.12e-54PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1AZT91e-56M1AZT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338612e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-19AGAMOUS-like 29