PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00370g00071.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22532.9 Da    PI: 9.7997
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00370g00071.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171665251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               i++k  r v+fskR++ ++KKAeELS +++ae  v++fs++gk y y+s
  Peaxi162Scf00370g00071.1 16 LIKSKQARCVSFSKRKASLFKKAEELSNMTGAESGVLLFSPSGKTYSYCS 65
                              69**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.446767IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-22766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-22883IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-13929IPR002100Transcription factor, MADS-box
PfamPF003197.6E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MERKRSMGRQ KIEMKLIKSK QARCVSFSKR KASLFKKAEE LSNMTGAESG VLLFSPSGKT  60
YSYCSTSIEE IIDKFFQWKQ DESDDDESDN PEKLSRVFKT FDDLRDEIKT IFELEKGRKR  120
RYNIIHPGSK ISPDKNMLNR LVGCKLQLDK LKKLTSRLQE LMPSTSRSVQ STSAKPCLSF  180
DLNILPGLDE GECSGTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153DKLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G3AI834e-52A0A2G3AI83_CAPAN; Uncharacterized protein
TrEMBLM1AZT94e-52M1AZT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338616e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-19AGAMOUS-like 29