PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00373g00048.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 243aa    MW: 26765.3 Da    PI: 5.7223
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00373g00048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26063.17.3e-2051100150
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 
                               +CaaCk+lrr+C + Cvlapyfp ++p kf ++h++FGasn++kll++ +
  Peaxi162Scf00373g00048.1  51 PCAACKILRRRCIEMCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQKRN 100
                               7*********************************************9854 PP
2DUF26057.73.5e-181221833899
                    DUF260  38 GasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                               G +  + + ++lpe++r d+++s+v+eA+ar+rdPvyG++g i++lq+q+ +l+aela+++ 
  Peaxi162Scf00373g00048.1 122 GETPQILIFQELPEDQRADTVNSIVFEANARIRDPVYGCTGAISQLQKQITELQAELAKAQV 183
                               5555566889************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.38350185IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-185199IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-16127182IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MECSDTTTLT TSPTACSQYS PSSSSSLNSP GGSAGSTLAP SSPPSMVIMT PCAACKILRR  60
RCIEMCVLAP YFPPTEPLKF TIAHRVFGAS NIIKLLQKRN RSIYRLSRHF FKDHGISLNT  120
YGETPQILIF QELPEDQRAD TVNSIVFEAN ARIRDPVYGC TGAISQLQKQ ITELQAELAK  180
AQVEMLNAQS QNANLVSLIC MQMTQSGENN NTTVSPDDQL AYGNTDLFLE DNRAYAAWEP  240
LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-36391872113LOB family transfactor Ramosa2.1
5ly0_B2e-36391872113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485630.12e-89PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4B9N05e-88A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009588230.14e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-64LOB domain-containing protein 1