PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00373g00063.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 131aa    MW: 14741.7 Da    PI: 4.9275
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00373g00063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26056.21e-17217250101
                    DUF260  50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                                e++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela++++e+
  Peaxi162Scf00373g00063.1  21 TEDRRADAVNSMVYEANARIRDPVYGCAGAICQLQKQINELQAELAKAQAEI 72 
                               45669******************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.505172IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-152269IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MNIRENMKCI KLKLGTEPKE TEDRRADAVN SMVYEANARI RDPVYGCAGA ICQLQKQINE  60
LQAELAKAQA EILNVKCQNA NLVELICMKM SQDKENNLSI SPNHNGQQAY GNTSIFFEDS  120
SAYAAWEPLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-15247763116LOB family transfactor Ramosa2.1
5ly0_B8e-15247763116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246718.13e-56PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-30LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1J6J9G76e-55A0A1J6J9G7_NICAT; Lob domain-containing protein 1
STRINGXP_009780362.12e-53(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2008933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-24LOB domain-containing protein 1