PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00373g00510.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 205aa MW: 22666.8 Da PI: 5.0127

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00373g00510.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.6	8.7e-43	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA+ar+rdPvyG++g i++lq+ Peaxi162Scf00373g00510.1 45 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPEDQRADAVNSMVYEANARIRDPVYGCAGAIFQLQK 129 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q ++l+aela+++ e Peaxi162Scf00373g00510.1 130 QTSELQAELAKAQVE 144 ********99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.879	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	45	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MACSDKSTLA AAQTTCSHDQ FFCSSSPRSI LTPPPSPALQ VILTPCAACK ILRRRCVEKC 60 VLAPYFPPTE PLKFTIAHRV FGASNIIKFL QELPEDQRAD AVNSMVYEAN ARIRDPVYGC 120 AGAIFQLQKQ TSELQAELAK AQVEILNVKS QNANLVELIC MEMSQNQENN SSVSSDHNDQ 180 QAYDNTAGLV LEDNRVFAAW EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	45	147	11	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	45	147	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485630.1	3e-99	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-74	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4B9N0	7e-98	A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009588230.1	6e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-74	LOB domain-containing protein 1