PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00382g00087.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20006.8 Da    PI: 8.8618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00382g00087.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.12.7e-091662248
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              +ie + n ++tfs+Rr  + K A+ L +  ++++ +i+fs+++k + 
  Peaxi162Scf00382g00087.1 16 KIEKEENLYTTFSRRRSSLYKTASDLAIQFNIDIGIILFSPKNKPFS 62
                              599999************************************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.385767IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-7929IPR002100Transcription factor, MADS-box
PfamPF003194.9E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEVKLTRGRQ KIPMVKIEKE ENLYTTFSRR RSSLYKTASD LAIQFNIDIG IILFSPKNKP  60
FSFVHPTVEA VIDRFLDPHA QLSEGTRLVA AHVHNKVNEL NRKSKELDKV EETTNKEALE  120
YEKMKEIGPK GWWESIEQLD EDAIAKFEAW LKATAFTIDR RLNQLKNEAS TST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.12e-68PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV14e-67A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595132.12e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-25AGAMOUS-like 61