PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00382g00711.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 228aa MW: 25575.3 Da PI: 7.4498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00382g00711.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.3	1.4e-10	4	46	1	38
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFG 38 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G Peaxi162Scf00382g00711.1 4 SCNGCRVLRKGCSDNCSLRPCLqwiksPDSQANATVFLAKFYG 46 6*****************************************9 PP
2	DUF260	32	3.5e-10	48	89	57	98
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +++sl+yeA+ r+ +Pv+G+vg++ +++++ +q+++e++ + Peaxi162Scf00382g00711.1 48 IFKSLLYEACGRIINPVHGSVGLMCSGNWKRCQEAVEAVFKG 89 799********************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.3E-7	4	47	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-6	48	85	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCS LRPCLQWIKS PDSQANATVF LAKFYGHIFK SLLYEACGRI 60 INPVHGSVGL MCSGNWKRCQ EAVEAVFKGS TIMEFPINNE EDSTSHEVPH QIIPFKGCDI 120 RHLSKNSSGQ FHEVKIRNRF KRKATKVDKV YVPVVAEEYL TNEPSKFSIT GWDFGQIEDE 180 LKRAASHDSF SVETVEPSLV NRAEPVLPVK LEEVGHEAGL ELTLGLMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255294.1	1e-115	PREDICTED: LOB domain-containing protein 42-like
Swissprot	Q9M886	1e-50	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1J6HYJ8	1e-114	A0A1J6HYJ8_NICAT; Lob domain-containing protein 42
STRING	XP_009777707.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	4e-53	LOB domain-containing protein 42