PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00390g00043.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 213aa MW: 23262.5 Da PI: 8.96

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00390g00043.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7e-42	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++p +r da++slvyeA++r+rdPvyG++g i++lqq Peaxi162Scf00390g00043.1 39 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLQEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQ 123 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ael++l++e Peaxi162Scf00390g00043.1 124 QVQTLQAELNALRAE 138 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.407	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	39	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSRERERLDA IGKKLKTEID ASNLQQEMGR RHILNTVTPC AACKLLRRRC AEECPFSPYF 60 SPHEPHKFAA VHKVFGASNV SKLLQEVPVG QRADAANSLV YEANVRLRDP VYGCMGAIST 120 LQQQVQTLQA ELNALRAEIL RYKYREAANT LIASISTSVA ELPQAPPTPS PPPPPSVVVV 180 SSSSTSSVSS LYTPPSNGAK FSPIPNNSIP YFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-45	39	146	11	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-45	39	146	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-81	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078806.1	1e-107	LOB domain-containing protein 13
Swissprot	Q8L5T5	5e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A3Q7H202	1e-105	A0A3Q7H202_SOLLC; Uncharacterized protein
STRING	Solyc06g082430.1.1	1e-106	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-76	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]