PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00390g00137.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 187aa    MW: 21241.3 Da    PI: 6.5916
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00390g00137.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.24.2e-3612109197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++  p ++reda+ s+vyeA  r+rdP+yG+vg+i++lq
  Peaxi162Scf00390g00137.1  12 PCSACKLLRRRCTQDCIFLPHFPPTEPQKFIVVHRVFGASNISKFLQQEiPMDNREDAVISMVYEATSRLRDPIYGSVGIISALQ 96 
                               7*********************************************87637778******************************* PP

                    DUF260  85 qqleqlkaelall 97 
                               +++ +l++el+++
  Peaxi162Scf00390g00137.1  97 KHVVHLQTELNEA 109
                               *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.78111113IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3712108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDSTNKKNKH MPCSACKLLR RRCTQDCIFL PHFPPTEPQK FIVVHRVFGA SNISKFLQQE  60
IPMDNREDAV ISMVYEATSR LRDPIYGSVG IISALQKHVV HLQTELNEAL AEAMSLRTQL  120
SNALCLPSLL EGSPFTPEDH RLHHFQKPNE QYAYDNASDA LPLLPQAADH NYCLQETEVL  180
PVPFFNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-371211411112LOB family transfactor Ramosa2.1
5ly0_B3e-371211411112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-65HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-65HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503569.11e-111PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ9LQR09e-41LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4CRC51e-109A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRINGSolyc06g082770.2.17e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-43LOB domain-containing protein 1