PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00394g00022.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23772.8 Da    PI: 9.7926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00394g00022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.2e-201563249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                              +ienk n +vtfskRr g++ KA+EL ++C+++vav++f+++ +k+y y
  Peaxi162Scf00394g00022.1 15 KIENKKNLEVTFSKRRDGLFRKANELTIMCGVQVAVVVFAPNkNKVYSY 63
                              79*************************************9753788887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-25666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.46656IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-24787IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-14828IPR002100Transcription factor, MADS-box
PfamPF003197.2E-221563IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-142843IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-144364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MPRRSEGRKK VEMAKIENKK NLEVTFSKRR DGLFRKANEL TIMCGVQVAV VVFAPNKNKV  60
YSYGHPHVDQ IVHGFLARNP PELIEALPNA RVTGLINELN QKEQALEWER KRGEALQAVR  120
SVNESGEQNW WEVPIDKLNY VQLQQVTEAM KGVREKVDKE AARQKMVNEN VAFPYSNFGS  180
ALAPGGNFDS SGASGSGSTS YFDSNRASGS GSTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242819.14e-62PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6INK39e-61A0A1J6INK3_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009779105.11e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2529422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-38AGAMOUS-like 62