PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00398g00005.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C3H

Protein Properties

Length: 369aa MW: 41387.3 Da PI: 7.7054

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00398g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.4	1.2e-08	85	105	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Peaxi162Scf00398g00005.1 85 PCPEFQK-GACQRGDLCEYAHG 105 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	19	45	68	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.6E-6	80	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.943	80	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	84	107	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-6	85	105	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MENFKIQIVS NYSIHFGICW TANMTMNNLA IENNFNTTYE FMMYSFKTRP CTRANSHCWT 60 ECPFFHPGEN ARRRDPIKYR YSCVPCPEFQ KGACQRGDLC EYAHGVFECW LHPAQYRTRV 120 CKYDMGLIPG SPFPVSVMSP SPLTPPMSPS ASGISSIGCP QQYVRALHLP GRFLHSSHLQ 180 SSLNARYIPA ADLRSHPEFD VQQQQIPNQL SYLSQPNMNS NSLNHSARPM TLNHANLENL 240 FSAESSSPRY SDQALAQAGF SPTHRSDACS QFRQQQTLLS PINTNFSPKH VQQQVRSLSS 300 RELGSNVSAI VGSPTDTWSK WGTATGNPDW TVNTGEFVGL SRSSSFEFAN HGEGPDVSWV 360 LRSVLEESP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MENFKIQIVS NYSIHFGICW TANMTMNNLA IENNFNTTYE FMMYSFKTRP CTRANSHCWT  60
ECPFFHPGEN ARRRDPIKYR YSCVPCPEFQ KGACQRGDLC EYAHGVFECW LHPAQYRTRV  120
CKYDMGLIPG SPFPVSVMSP SPLTPPMSPS ASGISSIGCP QQYVRALHLP GRFLHSSHLQ  180
SSLNARYIPA ADLRSHPEFD VQQQQIPNQL SYLSQPNMNS NSLNHSARPM TLNHANLENL  240
FSAESSSPRY SDQALAQAGF SPTHRSDACS QFRQQQTLLS PINTNFSPKH VQQQVRSLSS  300
RELGSNVSAI VGSPTDTWSK WGTATGNPDW TVNTGEFVGL SRSSSFEFAN HGEGPDVSWV  360
LRSVLEESP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013776	1e-89	BT013776.1 Lycopersicon esculentum clone 132664R, mRNA sequence.
GenBank	HG975449	1e-89	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	1e-89	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543711.1	1e-154	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	Q10EL1	6e-99	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A2G2VVY7	1e-155	A0A2G2VVY7_CAPBA; Zinc finger CCCH domain-containing protein 56
STRING	XP_009781965.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25300	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-79	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]