PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00407g00639.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 405aa    MW: 45957.6 Da    PI: 7.9342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00407g00639.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-073454526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Peaxi162Scf00407g00639.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
                              5******.***********997 PP
2zf-CCCH25.71.9e-08142163426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C+ fa+ G C++G++C+++Hg
  Peaxi162Scf00407g00639.1 142 SICS-FAAAGNCPRGEKCPYIHG 163
                               6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1452956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53253IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164138165IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4139164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5139163IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5142163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4143163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.27E-12198271No hitNo description
Gene3DG3DSA:3.30.40.106.0E-10200266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.98E-4206266No hitNo description
PfamPF136395.4E-7206265IPR001841Zinc finger, RING-type
SMARTSM001842.4E-7207264IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.593207265IPR001841Zinc finger, RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.11294322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206294323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSKRVQCKFF VHGACLKGEH CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSQKP  60
SLPSPSAPAQ HLLSASRPTT LSPEILVDGA GFLSSISAEC LASGRPLYSP NQPAWSENSE  120
HHDVEGIDNL VELKSSNPAD QSICSFAAAG NCPRGEKCPY IHGDLCPICA KHCLHPFRPQ  180
EREEHMKTCE KRQKHLELLK HSQEIECSVC LERVLSKTTV AERKFGILSE CDHPFCVSCI  240
RNWRGASPST RIDVNSTFRS CPICRKLSYF VIPSVIWYST KEEKQDILDS YKAKLRSVDC  300
KHFDFGNGTC PFGTSCFYKH QFRDGRLEEV VLRHLGSEDG STVIAKDIRL SDFLSNLRIR  360
MQFSMINYAL ELRYRHSIPD KELLGTDMAF QARNCLVIMD IYIKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779785.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-166C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1U7WZZ10.0A0A1U7WZZ1_NICSY; E3 ubiquitin-protein ligase makorin-like isoform X1
STRINGXP_009779785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-154C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]