PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00413g00075.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 230aa MW: 25511.5 Da PI: 8.4117

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00413g00075.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	20	68	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 +ienk n +vtfskRr+g++KKA+EL +LC+ae +++f+++ +k+y + Peaxi162Scf00413g00075.1 20 KIENKGNLEVTFSKRREGMFKKANELDILCGAETGIVVFAPNnNKVYSF 68 79*************************************9862577776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-23	11	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.558	11	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-24	12	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-15	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-20	20	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-15	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-15	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MHRLVMPRKS QGRKKVEMAK IENKGNLEVT FSKRREGMFK KANELDILCG AETGIVVFAP 60 NNNKVYSFGH PSVDQIVDRY LARYLPNDDE SSDDGVNPGL IEALRKANAS IINELNEKEQ 120 ALQREKMRGE ALRAVRRDNG EHNWWEAPIN KLNYVQLQQV KEAMEGAYEK VDREALRLKT 180 ANENVAFPYS NFASALAPGP GHNFDSSGAS GSGSTSYFDS NRASGSGSAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3kov_B	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3kov_I	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3kov_J	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_A	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_B	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_C	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_D	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_I	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
3p57_J	2e-13	12	106	1	89	Myocyte-specific enhancer factor 2A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260861.1	2e-61	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1J6INK3	6e-59	A0A1J6INK3_NICAT; Agamous-like mads-box protein agl62
STRING	XP_009601691.1	1e-58	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25309	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-37	AGAMOUS-like 62