PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00417g01020.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 152aa    MW: 16939.5 Da    PI: 10.3086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00417g01020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.74.4e-141185168
                      FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkv 68
                              +fY  YA++ GFsvr+ + +ks+++++++++ fvCsk+g+r+++  +        +k  ++  + r +Ck     
  Peaxi162Scf00417g01020.1 11 NFYLGYAHRNGFSVRRGRVTKSRKDQSVIDQAFVCSKNGFRAKNILEttdykilPKKDAKSYDNPRKDCKKATAF 85
                              6******************************************98887888888677777777778888765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-111182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEFSSLDDAF NFYLGYAHRN GFSVRRGRVT KSRKDQSVID QAFVCSKNGF RAKNILETTD  60
YKILPKKDAK SYDNPRKDCK KATAFQQMKI QKGPGRESST LSSSPHLGLV EFLFAGKLLQ  120
DSYGALMAGL LMVVVKPGTL GDRKFNNMEG VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884722.12e-20protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7EE036e-19A0A3Q7EE03_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-10FAR1-related sequence 12