PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00420g00728.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 215aa    MW: 24826.7 Da    PI: 10.2671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00420g00728.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.32e-29181521128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk....s 80 
                               lp GfrFhPtdeel v+yL kk+ + +l++  + ++ d++++ P dLp  +   +++ yfFsk++   ++ +k  +r ++    s
  Peaxi162Scf00420g00728.1  18 LPIGFRFHPTDEELFVHYLSKKIFSMPLPALIIPEHHDVFHTFPCDLPGDL---REKRYFFSKTNGPINNtSKGCSRLISgrdyS 99 
                               699***************************6656666***********544...4578****99987765155556644346679 PP

                       NAM  81 gyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               gyW+a g+ + +++      +g + g+kk + fy+ ++ k+ +t+Wvmh+y+l
  Peaxi162Scf00420g00728.1 100 GYWNAIGQGQLIMVPfphqqQGLVLGMKKAFRFYQTNQIKSLRTRWVMHQYSL 152
                               *************99986655666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-3914175IPR003441NAC domain
PROSITE profilePS5100537.02518175IPR003441NAC domain
PfamPF023651.0E-1919152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEEKKEGAKT GTVGNLNLPI GFRFHPTDEE LFVHYLSKKI FSMPLPALII PEHHDVFHTF  60
PCDLPGDLRE KRYFFSKTNG PINNTSKGCS RLISGRDYSG YWNAIGQGQL IMVPFPHQQQ  120
GLVLGMKKAF RFYQTNQIKS LRTRWVMHQY SLVSTSQNVN MMQVGDWSIF RIYQRKLKSK  180
NVIRAKANAL AEQCNKTNTC KRPLSAMLLQ ENEFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2291768166NO APICAL MERISTEM PROTEIN
1ut4_B2e-2291768166NO APICAL MERISTEM PROTEIN
1ut7_A2e-2291768166NO APICAL MERISTEM PROTEIN
1ut7_B2e-2291768166NO APICAL MERISTEM PROTEIN
3swm_A2e-22917611169NAC domain-containing protein 19
3swm_B2e-22917611169NAC domain-containing protein 19
3swm_C2e-22917611169NAC domain-containing protein 19
3swm_D2e-22917611169NAC domain-containing protein 19
3swp_A2e-22917611169NAC domain-containing protein 19
3swp_B2e-22917611169NAC domain-containing protein 19
3swp_C2e-22917611169NAC domain-containing protein 19
3swp_D2e-22917611169NAC domain-containing protein 19
3ulx_A2e-221417611169Stress-induced transcription factor NAC1
4dul_A2e-2291768166NAC domain-containing protein 19
4dul_B2e-2291768166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098680.0AF509868.1 Petunia x hybrida nam-like protein 5 (NH5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232702.11e-103PREDICTED: NAC domain-containing protein 41-like isoform X2
TrEMBLQ8LRM01e-148Q8LRM0_PETHY; Nam-like protein 5
STRINGXP_009767337.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.17e-36NAC domain containing protein 41