PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00428g00618.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 369aa    MW: 41546.1 Da    PI: 7.6638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00428g00618.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-051235226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               ++lC+ffa  G C  G+ C F+H+
  Peaxi162Scf00428g00618.1 12 SRVLCKFFAH-GACLKGEYCEFSHD 35
                              589***6666.*************5 PP
2zf-CCCH22.52.1e-074363526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Peaxi162Scf00428g00618.1 43 VCTYYQK-GLCAYGSRCRYEHV 63
                              5******.***********997 PP
3zf-CCCH18.73e-06150172326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               +++C+ fa+ G C++G++C+ +Hg
  Peaxi162Scf00428g00618.1 150 QPICS-FAAAGNCPHGENCTHIHG 172
                               68899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4881037IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-41136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-61335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1453865IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-54162IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-54363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-44362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821147174IPR000571Zinc finger, CCCH-type
SMARTSM003560.004148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4153172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.35E-13208280No hitNo description
Gene3DG3DSA:3.30.40.103.7E-10209275IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.77E-4215275No hitNo description
PfamPF000973.5E-8216273IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.637216274IPR001841Zinc finger, RING-type
SMARTSM001849.9E-8216273IPR001841Zinc finger, RING-type
PROSITE patternPS005180240249IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.291303332IPR000571Zinc finger, CCCH-type
SMARTSM003560.19303331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
ARCTYTRAYM FSRVLCKFFA HGACLKGEYC EFSHDWKDPP NNVCTYYQKG LCAYGSRCRY  60
EHVKVSQQPS LPSSSAPTQH LLSASPPTTL SPGMLADGAG LLSGVSAGYL ASGSPFYPPN  120
QPAWSENSEH HDVAEIDNIV ELKRINPADQ PICSFAAAGN CPHGENCTHI HGDLCPICGK  180
HCLHPFRPHE REEHMKTCEK RQKHLDLLKH SQEIECSVCL ERVLSKTTAA ERKFGILSEC  240
DHPFCISCIR NWRSGSPSSG MDINSTYRTC PICRKLSYFV IPSVIWYSTE EEKQEILDSY  300
KAKLRSIDCK HFDFGNGTCP FGTSCFYKHQ YRDGRQEEVV LRHLGSEDGS TVIAKNIRLS  360
DFLSNMRIR
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345463.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-168C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0V0IBJ40.0A0A0V0IBJ4_SOLCH; Putative zinc finger CCCH domain-containing protein 69-like
STRINGXP_009779785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-155C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]