PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00431g00213.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 343aa MW: 38714.8 Da PI: 8.3856

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00431g00213.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.8	1.1e-15	66	131	2	61
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtg 61 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e+++ ++ +r+raetr+g Peaxi162Scf00431g00213.1 66 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKENLgrdgggGSRVKRPRAETRVG 131 *****************************************9988788898855555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-13	66	130	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.806	128	166	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-10	136	164	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-8	141	168	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLGIGVGVGV DDTIDIEHPG EESGDKHLTD PFDGRSFSEV HVPEGDMNLE PYEGMEFESE 60 EAAKAFYNSY ARRVGFSTRV SMSRRSRRDG AIIQRSFVCA KEGFRVEKEN LGRDGGGGSR 120 VKRPRAETRV GFHYNVRDIK ASCSCQMFEF SGLLCRHILT VFRVTNVLTL PPCFVMKRWT 180 RNAKSGVMLE ERTFNLSNSC QESFTVRYNN LQHEALKYVD EGVKDEDCYK VARDALQEAA 240 NKAAIAKTAD LEVSNSSGPF KGESAAWESH VNNPFKARQS SADPSTPMDE RDKKIQKLTH 300 KLERARRKCE LYRANLLTVL KDIEQQKLQL TVKVQSIKLG IKD

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLGIGVGVGV DDTIDIEHPG EESGDKHLTD PFDGRSFSEV HVPEGDMNLE PYEGMEFESE  60
EAAKAFYNSY ARRVGFSTRV SMSRRSRRDG AIIQRSFVCA KEGFRVEKEN LGRDGGGGSR  120
VKRPRAETRV GFHYNVRDIK ASCSCQMFEF SGLLCRHILT VFRVTNVLTL PPCFVMKRWT  180
RNAKSGVMLE ERTFNLSNSC QESFTVRYNN LQHEALKYVD EGVKDEDCYK VARDALQEAA  240
NKAAIAKTAD LEVSNSSGPF KGESAAWESH VNNPFKARQS SADPSTPMDE RDKKIQKLTH  300
KLERARRKCE LYRANLLTVL KDIEQQKLQL TVKVQSIKLG IKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631560.1	1e-114	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	4e-56	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AX63	1e-111	A0A1S4AX63_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_009631560.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-52	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]