PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00438g00628.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family E2F/DP
Protein Properties Length: 407aa    MW: 45692.7 Da    PI: 6.6241
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00438g00628.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.14.5e-26143208171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               r+++sL+llt+kf++ll+++e+g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  Peaxi162Scf00438g00628.1 143 RYDNSLGLLTKKFISLLQEAEDGTLDLNHSADVL---KV--AKRRIYDITNVLEGIGLIEKTTKSHIRWKG 208
                               689*******************************...88..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.3E-27142209IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-32143208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.94E-16143206IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.4E-24145208IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146608.56E-36219326No hitNo description
SuperFamilySSF1440741.05E-23220325No hitNo description
PfamPF164212.0E-22224323IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
GPFRFESEVK QRLQSLRPFP LFSTNPPFSP FIINIMSTAS ENAELNLNLN LSLHLPNLPC  60
RRTTTPPSTN PRLSSTFLYP LKSENENFKD YSCGYGVSKR SRQAASARTK QSCKGKASRD  120
AISAATGINA DPLDNLNLGG NYRYDNSLGL LTKKFISLLQ EAEDGTLDLN HSADVLKVAK  180
RRIYDITNVL EGIGLIEKTT KSHIRWKGFE PTRPRGLDNQ VSKLKEEIEY LNAEDCRLDN  240
CIREKLAQIR TLESDVNCQK SLFLMEEDIM SLPQFKDKTI IAIKAPYASS IEVPDPCEDL  300
HFSERQYRLI LRSTTGPIDL FLLSKQGRQQ EDITIKHAKP LDALCGCTEK MDDAYLSAVP  360
PSPLNSTTSK DSGVHRIVPS HAGIDDDYWL RSDQEVSATD LWGVEYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24143211776PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181LKVAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539220.0HE653922.1 Nicotiana tabacum mRNA for transcription factor E2FC (E2FC gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613530.10.0PREDICTED: transcription factor E2FC-like
TrEMBLA0A1S3XL480.0A0A1S3XL48_TOBAC; transcription factor E2FC-like
STRINGXP_009613530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-80E2F/DP family protein