PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00447g00082.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 216aa    MW: 24662.7 Da    PI: 7.4387
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00447g00082.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.6e-313589358
               ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                              k +YkeClkNhA+ +G+havDGCgEfm++ geegt +++kCaAC+CHRnFHR++ +
  Peaxi162Scf00447g00082.1 35 KPKYKECLKNHAVGIGSHAVDGCGEFMAA-GEEGTLESFKCAACNCHRNFHRKHIV 89
                              679*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-211886IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-283787IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-283787IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.13887IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-17126199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28128199IPR009057Homeodomain-like
TIGRFAMsTIGR015657.5E-25138195IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDFEDKEIHD GRSGRPQTPP SPGELDTEAP LTMRKPKYKE CLKNHAVGIG SHAVDGCGEF  60
MAAGEEGTLE SFKCAACNCH RNFHRKHIVE ITTTYPLLTH HPYNHFPPPP YHHHHHQQLT  120
PLALPSTSGQ NDMSNGGKKR FRTKFSQEQK MKMQELAEKI GWRIQRQDDS IVQQFCDENG  180
VKRNVFKVWM HNNKQTLGKN LSLEPSNLNE AAEEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-221381941773ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246607.11e-78PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
SwissprotQ6YXH54e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1S3ZEH48e-76A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2
TrEMBLA0A1U7YG848e-76A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRINGXP_009802157.14e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-53homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]