PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00449g00069.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14370.9 Da    PI: 4.2306
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00449g00069.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-10250149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              k+ie++  r  tf   ++ i+K A+ELSv ++a v v+++s++g+ y y
  Peaxi162Scf00449g00069.1  2 KKIESEAIRLATFLLLKTIIFKEAHELSVTTGAVVGVLLYSPNGNPYVY 50
                              689*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001201.78E-13153No hitNo description
SuperFamilySSF554551.57E-12175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.512154IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-4153IPR002100Transcription factor, MADS-box
PfamPF003191.7E-11350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKKIESEAIR LATFLLLKTI IFKEAHELSV TTGAVVGVLL YSPNGNPYVY GSPGSFDANT  60
NRFLNGNPYD CKNNHGMAAS NREQERAWLD AESVRLDELK KELETETSQV TNDLDVVSDP  120
DDEETFEAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-12AGAMOUS-like 64