PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00451g00625.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 280aa MW: 32187 Da PI: 5.4134

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00451g00625.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.1	8.9e-50	16	135	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+deel+++yL++kv ++++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWka Peaxi162Scf00451g00625.1 16 LPPGFRFHPSDEELITHYLCPKVLDSNFSA-KAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKA 99 79*************************9.89***********888999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 tgkdke+++ ++lvg+kktLvfy+grapkg k++W Peaxi162Scf00451g00625.1 100 TGKDKEIFK-LKTLVGMKKTLVFYQGRAPKGAKSNWS 135 ****9.899*********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-52	12	135	IPR003441	NAC domain
PROSITE profile	PS51005	47.792	16	164	IPR003441	NAC domain
Pfam	PF02365	2.4E-23	17	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEDYSEYCKH EDEMELPPGF RFHPSDEELI THYLCPKVLD SNFSAKAIGE VDLNKIEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKLK TLVGMKKTLV 120 FYQGRAPKGA KSNWSAGGKK IHISGLTRNN NNINDNSLCS NLPPLMDISS NDNQITKTAT 180 YRGDTSNYSH VTCFSNSLED QKPQISFVDD LTTNNNHSYV ENFQYGDFGL MQDHSILRLL 240 FENNGSEPKP SYEMCTRAYE DQEFPITSAA PVDLDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-47	13	159	17	163	NAC domain-containing protein 19
3swm_B	4e-47	13	159	17	163	NAC domain-containing protein 19
3swm_C	4e-47	13	159	17	163	NAC domain-containing protein 19
3swm_D	4e-47	13	159	17	163	NAC domain-containing protein 19
3swp_A	4e-47	13	159	17	163	NAC domain-containing protein 19
3swp_B	4e-47	13	159	17	163	NAC domain-containing protein 19
3swp_C	4e-47	13	159	17	163	NAC domain-containing protein 19
3swp_D	4e-47	13	159	17	163	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF509877	0.0	AF509877.1 Petunia x hybrida nam-like protein 14 (NH14) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592902.1	1e-154	PREDICTED: NAC domain-containing protein 92-like
Refseq	XP_016490965.1	1e-154	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	6e-89	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	Q8LRL3	1e-178	Q8LRL3_PETHY; Nam-like protein 14 (Fragment)
STRING	XP_009592902.1	1e-154	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-89	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]