PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00454g00012.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 236aa    MW: 25932.2 Da    PI: 4.8712
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00454g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.7e-16123159135
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Peaxi162Scf00454g00012.1 123 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 159
                               **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.1012358IPR010399Tify domain
SMARTSM009797.6E-62358IPR010399Tify domain
PfamPF062002.5E-92757IPR010399Tify domain
PROSITE profilePS510179.90188130IPR010402CCT domain
PfamPF062031.5E-1188119IPR010402CCT domain
SMARTSM004018.9E-12117170IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-11120166No hitNo description
CDDcd002022.53E-15122169No hitNo description
Gene3DG3DSA:3.30.50.109.7E-14122164IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.3E-14123159IPR000679Zinc finger, GATA-type
PROSITE patternPS003440123150IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEEEGDGGAY DDEETMDEAE EEVSRRSSEL TLAFEGEVYV FPAVTPEKVQ AVLLLLGECN  60
IPTAVPIDEV PFDNKVENLP KQANLSRRFA SLVRFREKRK ERCFDKKIRY SVRKEVAQSP  120
GKCHHCGVSE NCTPAMRRGP DGPRTLCNAC GLKWANKGTL RDLSKGGRKS YVEPKGLGIP  180
DNPVKAFAEG SLDHCADVEK NLFSTESNLA NGIPVGIISS SPNLVEQETL VAFGND
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0413609e-49CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBankHG9754439e-49HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755169e-49HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612622.11e-129PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotA2XKR71e-47GAT18_ORYSI; GATA transcription factor 18
SwissprotQ8GXL76e-48GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3Q7H0U61e-129A0A3Q7H0U6_SOLLC; Uncharacterized protein
STRINGXP_009612622.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-49ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]