PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00460g00061.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 254aa    MW: 28195.1 Da    PI: 5.9226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00460g00061.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001384106123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C + F++   L  H+++H
  Peaxi162Scf00460g00061.1  84 YTCTFCRREFRSAQALGGHMNVH 106
                               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-681111No hitNo description
PROSITE profilePS5015711.15784111IPR007087Zinc finger, C2H2
SMARTSM003550.006684106IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-584107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSAELGILSL TQLQKLAQSQ EQQYQQQSPP QPQLNSRSTT GYWMWNTKQS IPTTAQDDDD  60
SWEVRAFEED TGNAMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQAPSLA  120
SNSNHTLPNA NSTLLIPTQE FAANGGLCLL YSLPNPNGHN FNPTLTKSCI NNNSPSTLLS  180
ISPLPTNNLM SPCPPPPNLN FPINRPPSIN TSFNISEPSA SITSNDNNNH DYGSNKRDSS  240
AIEDEIDLEL RLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-1379106229superman protein
2l1o_A6e-1379106229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754475e-63HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554111.11e-121PREDICTED: zinc finger protein JAGGED
TrEMBLA0A1U8F6311e-119A0A1U8F631_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AFF71e-119A0A2G3AFF7_CAPAN; zinc finger protein JAGGED
STRINGXP_009589081.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-38C2H2 family protein