PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00472g00033.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family S1Fa-like
Protein Properties Length: 121aa    MW: 14102.5 Da    PI: 9.8293
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00472g00033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA117.74.7e-372489470
                      S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                              + ve+kG+nPGli+llv + lll fl gny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe
  Peaxi162Scf00472g00033.1 24 KDVEVKGFNPGLIILLV-AWLLLAFLFGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 89
                              679**********9986.89**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046894.2E-352689IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDYEGDFGDN NPPPSFYRMK NMAKDVEVKG FNPGLIILLV AWLLLAFLFG NYLLYMYAQK  60
TLPPKKKKPV SKKKLKRERL KQGVSAPGES ILVTPWYTEY VWINSQEMVE PYDVPISHHH  120
R
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547221e-43AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBankHG9755221e-43HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627553.13e-28PREDICTED: DNA-binding protein S1FA-like
RefseqXP_009781429.13e-28PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016432997.13e-28PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016471310.13e-28PREDICTED: DNA-binding protein S1FA-like
SwissprotP425535e-12S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A1S3WZD47e-27A0A1S3WZD4_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1S4A3X37e-27A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1U7X3I17e-27A0A1U7X3I1_NICSY; DNA-binding protein S1FA-like
STRINGXP_009781429.11e-27(Nicotiana sylvestris)
STRINGXP_009627553.11e-27(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249