PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00488g00093.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8393.25 Da PI: 10.7429

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00488g00093.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.6	1.2e-42	11	77	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + ve+kG+nPGlivl+v+ggl+l fl+gny+lyvyaqk+lPP+kkkPvskkk+kre+lkqGv++PGe Peaxi162Scf00488g00093.1 11 KDVEVKGFNPGLIVLIVIGGLVLAFLIGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 77 579***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	2.0E-6	12	77	No hit	No description
Pfam	PF04689	1.2E-40	13	77	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MCGCSKKSMA KDVEVKGFNP GLIVLIVIGG LVLAFLIGNY ALYVYAQKTL PPKKKKPVSK 60 KKMKRERLKQ GVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254722	4e-73	AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBank	HG975522	4e-73	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	3e-26	DNA-binding protein S1FA
Refseq	XP_024026346.1	3e-26	DNA-binding protein S1FA
Swissprot	Q7XLX6	2e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	3e-25	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	Lus10015073	5e-27	(Linum usitatissimum)
STRING	Lus10023177	5e-27	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	8e-06	S1FA-like DNA-binding protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]