PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00496g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 249aa    MW: 28297.7 Da    PI: 6.9241
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00496g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.4e-2810100191
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Caa  +++  C++dC+lapyfpa+qpk f+n+h+lF +sn+l ll++l+++ +++a++s++yeA+ar ++PvyG+++  + l+q
  Peaxi162Scf00496g00005.1  10 PCAARNYMNIPCTSDCPLAPYFPADQPKVFENLHRLFDVSNILILLHQLDPSMKKAAVKSIIYEANARDKNPVYGCLSDTKFLNQ 94 
                               7****************************************************************************99999998 PP

                    DUF260  86 qleqlk 91 
                                 ++++
  Peaxi162Scf00496g00005.1  95 VFNSTR 100
                               777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.49109IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-2710100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTLNNGTNQP CAARNYMNIP CTSDCPLAPY FPADQPKVFE NLHRLFDVSN ILILLHQLDP  60
SMKKAAVKSI IYEANARDKN PVYGCLSDTK FLNQVFNSTR NFKKSVHNLP LINKNINYKG  120
SHCQYSVNLF LRFNWILFRL QGNYGKPAAY NAYTDTVPRP SSTQRNAGYG DHYQYQYSCA  180
GGDSFQGNQQ MRGPGPQAVY DQRDLDQPTD LFYLDDDHFT EPPQPDIEQA QLQHSSIAHD  240
LCSLAMEVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2161087109LOB family transfactor Ramosa2.1
5ly0_B8e-2161087109LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-30LOB domain-containing protein 27