PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00503g00003.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 348aa    MW: 39752.7 Da    PI: 7.9879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00503g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36221142103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F
  Peaxi162Scf00503g00003.1  22 FLTKTYQLVDDPTTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYF 97 
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               k+g+k+ll++i+r+k++
  Peaxi162Scf00503g00003.1  98 KRGEKHLLCEIHRRKTA 114
                               **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3814106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-6118111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.58E-3419111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLDNCEGILL SLDSHKSVPA PFLTKTYQLV DDPTTDHIVS WGEDDSTFVV WRPPEFARDL  60
LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEYFKRG EKHLLCEIHR RKTAQPQVTM  120
NHHHHSFNHP MNTNGPSFFQ NYPNTNRLSI SPPDSDEQQP NINWCDSPTT IVSSTNNNNI  180
NSVSALSEDN ERLRRSNNML MSELAHMRKL YNDIIYFVQN HVKPVTPSTS YNPCSLLPSS  240
MTPTPIVQKN MNQQFSYHQI SNPKQVGVNG MSCFNMNSPS KTSQSSVTIL DQEAGDFGRS  300
TKLFGVPLMS KKRVHPEYSS TSSMVETHKA RLVLEKNDLG LNLMPPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-221811417123Heat shock factor protein 1
5d5u_B2e-221811326131Heat shock factor protein 1
5d5v_B2e-221811326131Heat shock factor protein 1
5d5v_D2e-221811326131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754435e-79HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242811.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-110HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1J6INU40.0A0A1J6INU4_NICAT; Heat stress transcription factor b-4
STRINGXP_009800135.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4