PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00525g00006.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 146aa    MW: 17513 Da    PI: 6.789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00525g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.7e-3281231128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGf+F+Ptdeelv++yLk kv++ ++   ++i+++d  +++Pw+L++++  ++++wyfFs+ ++        +rat++gyWk+
  Peaxi162Scf00525g00006.1   8 LPPGFQFDPTDEELVMYYLKSKVANLPFYP-NIIPDLDFSSSDPWELKERALFSKNQWYFFSQVKE--------TRATERGYWKE 83 
                               79*************************888.89**************977777899*****99754........699******** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 +++++++k ++++ g+kk  v+y     + ++t+W+m+e++l
  Peaxi162Scf00525g00006.1  84 LHTNESIFKKcGEKVAGIKKYCVYY----IHEVQTNWIMEEFHL 123
                               *********9777889*********....44578********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-385130IPR003441NAC domain
PROSITE profilePS5100534.98146IPR003441NAC domain
PfamPF023652.4E-239123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDDQMIVLPP GFQFDPTDEE LVMYYLKSKV ANLPFYPNII PDLDFSSSDP WELKERALFS  60
KNQWYFFSQV KETRATERGY WKELHTNESI FKKCGEKVAG IKKYCVYYIH EVQTNWIMEE  120
FHLSSRNSFK KPSKKRESEK VLFNEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-25614118157NAC domain-containing protein 19
3swm_B7e-25614118157NAC domain-containing protein 19
3swm_C7e-25614118157NAC domain-containing protein 19
3swm_D7e-25614118157NAC domain-containing protein 19
3swp_A7e-25614118157NAC domain-containing protein 19
3swp_B7e-25614118157NAC domain-containing protein 19
3swp_C7e-25614118157NAC domain-containing protein 19
3swp_D7e-25614118157NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246639.16e-67PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1S4BYV52e-62A0A1S4BYV5_TOBAC; NAC domain-containing protein 104-like
TrEMBLA0A1U7XJZ32e-62A0A1U7XJZ3_NICSY; NAC transcription factor NAM-B2-like
STRINGXP_009792377.13e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-39xylem NAC domain 1